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RNA-seq Data Analysis : A Practical Approach, Paperback by Korpelainen, Eija; Tuimala, Jarno; Somervuo, Panu; Huss, Mikael; Wong, Garry, ISBN 1466595000, ISBN-13 9781466595002, Like New Used, Free shipping in the US
"RNA-seq offers unprecedented information about transcriptome, but harnessing this information with bioinformatics tools is typically a bottleneck. This self-contained guide enables researchers to examine differential expression at gene, exon, and transcript level and to discover novel genes, transcripts, and whole transcriptomes. Each chapter starts with theoretical background, followed by descriptions of relevant analysis tools. Th also provides examples using command line tools and the R statistical environment. For non-programming scientists, the same examples are covered using open source software with a graphical user interface"--
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